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As any Eclipse plugin, JSEclipse is very easy to uninstall from your system. It only takes a few steps:
Close the Eclipse workbench.
Open a file browser window and navigate to the folder where you installed Eclipse (e.g. c:\Eclipse)
Open the plugins folder.
Locate the file named com.interaktonline.jseclipse_x.jar (where x is the version number).
Delete the file.
Restart Eclipse. The plugin has been completely removed.